pdam_00009054 protein (Pocillopora damicornis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pdam_00009054

Mago-bind domain-containing protein. (179 aa)

Predicted Functional Partners:

pdam_00015009

0.999

pdam_00003904

0.996

pdam_00007788

0.635

pdam_00007865

0.605

pdam_00018775

0.565

pdam_00023992

0.529

pdam_00000947

0.499

pdam_00017303

0.442

pdam_00017728

0.414

Your Current Organism:

Pocillopora damicornis

NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pdam_00000947	pdam_00003904	A0A3M6T628	A0A3M6U661	Uncharacterized protein.	Uncharacterized protein.	0.956
pdam_00000947	pdam_00007788	A0A3M6T628	A0A3M6V4M9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.983
pdam_00000947	pdam_00009054	A0A3M6T628	A0A3M6T9K1	Uncharacterized protein.	Mago-bind domain-containing protein.	0.499
pdam_00000947	pdam_00015009	A0A3M6T628	A0A3M6T5I0	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.973
pdam_00000947	pdam_00017728	A0A3M6T628	A0A3M6UDM2	Uncharacterized protein.	Uncharacterized protein.	0.995
pdam_00003904	pdam_00000947	A0A3M6U661	A0A3M6T628	Uncharacterized protein.	Uncharacterized protein.	0.956
pdam_00003904	pdam_00007788	A0A3M6U661	A0A3M6V4M9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.999
pdam_00003904	pdam_00009054	A0A3M6U661	A0A3M6T9K1	Uncharacterized protein.	Mago-bind domain-containing protein.	0.996
pdam_00003904	pdam_00015009	A0A3M6U661	A0A3M6T5I0	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
pdam_00003904	pdam_00017728	A0A3M6U661	A0A3M6UDM2	Uncharacterized protein.	Uncharacterized protein.	0.895
pdam_00007788	pdam_00000947	A0A3M6V4M9	A0A3M6T628	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.983
pdam_00007788	pdam_00003904	A0A3M6V4M9	A0A3M6U661	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.999
pdam_00007788	pdam_00009054	A0A3M6V4M9	A0A3M6T9K1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Mago-bind domain-containing protein.	0.635
pdam_00007788	pdam_00015009	A0A3M6V4M9	A0A3M6T5I0	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
pdam_00007788	pdam_00017728	A0A3M6V4M9	A0A3M6UDM2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.923
pdam_00007865	pdam_00009054	A0A3M6T8C3	A0A3M6T9K1	Cytochrome b5 heme-binding domain-containing protein.	Mago-bind domain-containing protein.	0.605
pdam_00009054	pdam_00000947	A0A3M6T9K1	A0A3M6T628	Mago-bind domain-containing protein.	Uncharacterized protein.	0.499
pdam_00009054	pdam_00003904	A0A3M6T9K1	A0A3M6U661	Mago-bind domain-containing protein.	Uncharacterized protein.	0.996
pdam_00009054	pdam_00007788	A0A3M6T9K1	A0A3M6V4M9	Mago-bind domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.635
pdam_00009054	pdam_00007865	A0A3M6T9K1	A0A3M6T8C3	Mago-bind domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.605