STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00002259Uncharacterized protein. (608 aa)    
Predicted Functional Partners:
pdam_00021105
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 
 0.859
pdam_00018642
WD_REPEATS_REGION domain-containing protein.
    
   0.779
pdam_00017352
Density-regulated protein; Belongs to the DENR family.
    
 
 0.750
pdam_00001537
Uncharacterized protein.
    
   0.716
pdam_00012840
KH type-2 domain-containing protein.
    
 
 0.699
pdam_00005398
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
    
 
 0.696
pdam_00006323
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
    
 
 0.687
pdam_00019571
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
    
  0.675
pdam_00004898
C2H2-type domain-containing protein.
    
 
 0.663
pdam_00013603
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
 
 0.658
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.