pdam_00023138 protein (Pocillopora damicornis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pdam_00023138

Nrf1_DNA-bind domain-containing protein. (470 aa)

Predicted Functional Partners:

pdam_00012386

0.735

pdam_00004043

0.588

pdam_00019926

0.572

pdam_00010673

0.529

pdam_00013114

0.494

pdam_00019215

0.494

pdam_00014933

0.461

pdam_00022990

0.430

pdam_00014925

0.427

Your Current Organism:

Pocillopora damicornis

NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pdam_00004043	pdam_00019926	A0A3M6UC16	A0A3M6TGR8	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.423
pdam_00004043	pdam_00023138	A0A3M6UC16	A0A3M6TII8	Uncharacterized protein.	Nrf1_DNA-bind domain-containing protein.	0.588
pdam_00010673	pdam_00014933	A0A3M6T786	A0A3M6US37	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	0.726
pdam_00010673	pdam_00019926	A0A3M6T786	A0A3M6TGR8	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Deacetylase sirtuin-type domain-containing protein.	0.672
pdam_00010673	pdam_00023138	A0A3M6T786	A0A3M6TII8	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Nrf1_DNA-bind domain-containing protein.	0.529
pdam_00012386	pdam_00013114	A0A3M6TIK8	A0A3M6TWC6	RRM domain-containing protein.	Uncharacterized protein.	0.447
pdam_00012386	pdam_00014925	A0A3M6TIK8	A0A3M6USG1	RRM domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.465
pdam_00012386	pdam_00019215	A0A3M6TIK8	A0A3M6UEV7	RRM domain-containing protein.	Uncharacterized protein.	0.447
pdam_00012386	pdam_00019926	A0A3M6TIK8	A0A3M6TGR8	RRM domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.763
pdam_00012386	pdam_00023138	A0A3M6TIK8	A0A3M6TII8	RRM domain-containing protein.	Nrf1_DNA-bind domain-containing protein.	0.735
pdam_00013114	pdam_00012386	A0A3M6TWC6	A0A3M6TIK8	Uncharacterized protein.	RRM domain-containing protein.	0.447
pdam_00013114	pdam_00019926	A0A3M6TWC6	A0A3M6TGR8	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.436
pdam_00013114	pdam_00022990	A0A3M6TWC6	A0A3M6T9B5	Uncharacterized protein.	Uncharacterized protein.	0.447
pdam_00013114	pdam_00023138	A0A3M6TWC6	A0A3M6TII8	Uncharacterized protein.	Nrf1_DNA-bind domain-containing protein.	0.494
pdam_00014925	pdam_00012386	A0A3M6USG1	A0A3M6TIK8	Deacetylase sirtuin-type domain-containing protein.	RRM domain-containing protein.	0.465
pdam_00014925	pdam_00019926	A0A3M6USG1	A0A3M6TGR8	Deacetylase sirtuin-type domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.836
pdam_00014925	pdam_00023138	A0A3M6USG1	A0A3M6TII8	Deacetylase sirtuin-type domain-containing protein.	Nrf1_DNA-bind domain-containing protein.	0.427
pdam_00014933	pdam_00010673	A0A3M6US37	A0A3M6T786	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.726
pdam_00014933	pdam_00023138	A0A3M6US37	A0A3M6TII8	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Nrf1_DNA-bind domain-containing protein.	0.461
pdam_00019215	pdam_00012386	A0A3M6UEV7	A0A3M6TIK8	Uncharacterized protein.	RRM domain-containing protein.	0.447