STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00010069Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (135 aa)    
Predicted Functional Partners:
pdam_00012789
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.995
pdam_00006045
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 0.994
pdam_00002334
Autophagy_act_C domain-containing protein.
    
 0.984
pdam_00021429
Autophagy-related protein 3.
    
 0.958
pdam_00020029
WD_REPEATS_REGION domain-containing protein.
    
 0.957
pdam_00023549
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
  
  
 
0.901
pdam_00023045
Protein kinase domain-containing protein.
    
 
 0.894
pdam_00004236
Uncharacterized protein.
    
 0.894
pdam_00001447
Lipase_3 domain-containing protein.
   
 
 0.880
pdam_00016431
Uncharacterized protein.
   
 0.834
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.