STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00009195Methyltransf_25 domain-containing protein. (179 aa)    
Predicted Functional Partners:
pdam_00021105
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.747
pdam_00007390
Uncharacterized protein.
   
 0.713
pdam_00006686
Bms1-type G domain-containing protein.
   
 0.702
pdam_00000279
Uncharacterized protein.
   
 0.699
pdam_00009201
Uncharacterized protein.
   
 0.689
pdam_00017251
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.686
pdam_00021718
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 0.624
pdam_00005136
GRIP domain-containing protein.
   
  0.582
pdam_00016988
KH domain-containing protein.
   
  0.582
pdam_00005522
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
    
  0.577
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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