STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00001653MRG domain-containing protein. (422 aa)    
Predicted Functional Partners:
pdam_00020621
CXC domain-containing protein.
    
 0.985
pdam_00004021
WD_REPEATS_REGION domain-containing protein.
   
 0.911
pdam_00000282
Uncharacterized protein.
   
 0.845
pdam_00004866
Enhancer of polycomb-like protein.
    
 0.824
pdam_00010729
Uncharacterized protein.
    
 
 0.823
pdam_00000321
Uncharacterized protein.
    
 
 0.816
pdam_00024054
Uncharacterized protein.
    
 0.802
pdam_00002065
Uncharacterized protein.
   
 0.791
pdam_00003870
HDAC_interact domain-containing protein.
    
 0.767
pdam_00002749
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.766
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.