STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdam_00008825Uncharacterized protein. (800 aa)    
Predicted Functional Partners:
pdam_00013113
S1 motif domain-containing protein.
   
 
 0.816
pdam_00003038
Lactamase_B domain-containing protein.
   
  
 0.760
pdam_00012457
Uncharacterized protein.
 
      0.697
pdam_00007788
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 
 0.604
pdam_00018709
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
   
 
 0.594
pdam_00007984
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
    
 
 0.566
pdam_00019722
Uncharacterized protein.
   
  
 0.545
pdam_00005902
Uncharacterized protein.
      
 0.538
pdam_00005895
PID domain-containing protein.
      
 0.528
pdam_00002199
Uncharacterized protein.
      
 0.526
Your Current Organism:
Pocillopora damicornis
NCBI taxonomy Id: 46731
Other names: P. damicornis, Pocillopora caespitosa laysanensis, Pocillopora damicornis laysanensis, cauliflower coral, lace coral
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