yhgF protein (Escherichia coli BL21) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

yhgF

annotation not available (773 aa)

Predicted Functional Partners:

rpoC

0.941

rpoA

0.925

rpoB

0.907

rpoZ

0.902

yejH

0.868

gpmM

0.722

greB

0.666

dinG

0.585

yoaA

0.585

pheT

0.515

Your Current Organism:

Escherichia coli BL21

NCBI taxonomy Id: 469008
Other names: E. coli BL21(DE3), Escherichia coli BL21(DE3), Escherichia coli str. BL21(DE3), Escherichia coli strain BL21(DE3)

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dinG	rpoA	B21_00783	B21_03097	Atp-dependent dna helicase ding; DNA-dependent ATPase and 5'-3' DNA helicase	Rna polymerase, alpha subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.675
dinG	rpoB	B21_00783	B21_03816	Atp-dependent dna helicase ding; DNA-dependent ATPase and 5'-3' DNA helicase	Rna polymerase, beta subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.677
dinG	rpoC	B21_00783	B21_03817	Atp-dependent dna helicase ding; DNA-dependent ATPase and 5'-3' DNA helicase	Rna polymerase, beta' subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.681
dinG	rpoZ	B21_00783	B21_03458	Atp-dependent dna helicase ding; DNA-dependent ATPase and 5'-3' DNA helicase	Dna-directed rna polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits	0.677
dinG	yejH	B21_00783	B21_02073	Atp-dependent dna helicase ding; DNA-dependent ATPase and 5'-3' DNA helicase	annotation not available	0.872
dinG	yhgF	B21_00783	B21_03211	Atp-dependent dna helicase ding; DNA-dependent ATPase and 5'-3' DNA helicase	annotation not available	0.585
gpmM	yhgF	B21_03421	B21_03211	2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate	annotation not available	0.722
greB	rpoA	B21_03210	B21_03097	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length	Rna polymerase, alpha subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.943
greB	rpoB	B21_03210	B21_03816	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length	Rna polymerase, beta subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.845
greB	rpoC	B21_03210	B21_03817	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length	Rna polymerase, beta' subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.852
greB	rpoZ	B21_03210	B21_03458	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length	Dna-directed rna polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits	0.621
greB	yhgF	B21_03210	B21_03211	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length	annotation not available	0.666
pheT	rpoA	B21_01671	B21_03097	Phenylalanyl-trna synthetase beta-chain, subunit of phenylalanyl-trna synthetase; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	Rna polymerase, alpha subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.888
pheT	rpoB	B21_01671	B21_03816	Phenylalanyl-trna synthetase beta-chain, subunit of phenylalanyl-trna synthetase; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	Rna polymerase, beta subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.733
pheT	rpoC	B21_01671	B21_03817	Phenylalanyl-trna synthetase beta-chain, subunit of phenylalanyl-trna synthetase; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	Rna polymerase, beta' subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.566
pheT	yhgF	B21_01671	B21_03211	Phenylalanyl-trna synthetase beta-chain, subunit of phenylalanyl-trna synthetase; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	annotation not available	0.515
rpoA	dinG	B21_03097	B21_00783	Rna polymerase, alpha subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	Atp-dependent dna helicase ding; DNA-dependent ATPase and 5'-3' DNA helicase	0.675
rpoA	greB	B21_03097	B21_03210	Rna polymerase, alpha subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length	0.943
rpoA	pheT	B21_03097	B21_01671	Rna polymerase, alpha subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	Phenylalanyl-trna synthetase beta-chain, subunit of phenylalanyl-trna synthetase; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily	0.888
rpoA	rpoB	B21_03097	B21_03816	Rna polymerase, alpha subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	Rna polymerase, beta subunit, subunit of rna polymerase, core enzyme, rna polymerase sigma 70, rna polymerase sigma 54, rna polymerase sigma 32, rna polymerase sigma 38, rna polymerase sigma 28, rna polymerase sigma 19 and rna polymerase sigma 24; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.999