STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_0555PFAM: protein of unknown function DUF181; KEGG: bcy:Bcer98_0958 hypothetical protein. (657 aa)    
Predicted Functional Partners:
Tbis_0550
PFAM: Lantibiotic dehydratase domain protein; KEGG: scl:sce9070 hypothetical protein.
 
  
 0.966
Tbis_0553
KEGG: met:M446_3966 hypothetical protein.
 
  
 0.962
Tbis_0551
Hypothetical protein; KEGG: bce:BC5083 lantibiotic biosynthesis protein.
  
  
 0.897
Tbis_0552
KEGG: bce:BC5082 hypothetical protein.
  
  
 0.889
Tbis_0554
PFAM: protein of unknown function DUF181; KEGG: acp:A2cp1_3940 TPR repeat-containing protein.
       0.818
Tbis_0556
TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: nmu:Nmul_A0853 peptidase M20D, amidohydrolase.
       0.752
Tbis_0549
Hypothetical protein.
       0.550
Tbis_1764
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_0666 ABC-2 type transporter.
 
  
 0.531
Tbis_1765
PFAM: ABC-2 type transporter; KEGG: bmj:BMULJ_01600 ABC-2 type transport system permease protein.
 
  
 0.520
Tbis_0909
PFAM: ABC-2 type transporter; KEGG: sus:Acid_0080 ABC-2 type transporter.
  
  
 0.469
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.