STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_1748PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: pde:Pden_3050 regulatory proteins, IclR. (247 aa)    
Predicted Functional Partners:
Tbis_1092
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: gur:Gura_3644 regulatory protein, IclR.
  
     0.775
Tbis_2803
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: rme:Rmet_4142 transcriptional regulator, IclR family.
  
     0.755
Tbis_1112
PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: scl:sce0175 IclR family transcriptional regulator.
  
     0.588
Tbis_1751
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: 2-oxoglutarate dehydrogenase E2 component; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase).
 
     0.582
Tbis_2600
PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: pde:Pden_0322 allophanate hydrolase subunit 2.
  
    0.562
Tbis_1749
Pyruvate dehydrogenase (acetyl-transferring); PFAM: dehydrogenase E1 component; KEGG: azo:azo3867 acetoin dehydrogenase, alpha subunit.
       0.532
Tbis_1750
PFAM: Transketolase central region; Transketolase domain protein; KEGG: rfr:Rfer_3966 transketolase.
       0.498
Tbis_2601
Urea amidolyase related protein; KEGG: aav:Aave_3511 allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2.
  
    0.496
Tbis_1747
KEGG: kinetoplast-associated protein-like protein.
       0.458
Tbis_1733
PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: bph:Bphy_4834 regulatory protein GntR HTH.
 
  
 0.455
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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