STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_2767Superoxide dismutase copper/zinc binding protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (204 aa)    
Predicted Functional Partners:
Tbis_0014
TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein; KEGG: bpy:Bphyt_6893 heavy metal translocating P- type ATPase.
   
 0.969
Tbis_3354
PFAM: Heavy metal transport/detoxification protein; KEGG: rpi:Rpic_3544 heavy metal transport/detoxification protein.
   
 0.969
Tbis_1293
PFAM: Cytochrome b/b6 domain; KEGG: sus:Acid_6208 cytochrome b/b6 domain- containing protein.
    
 
 0.940
Tbis_1294
PFAM: Rieske [2Fe-2S] domain protein; KEGG: vei:Veis_4950 Rieske (2Fe-2S) domain protein.
    
 
 0.929
Tbis_1289
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: hch:HCH_00047 cytochrome-c oxidase, subunit II.
    
 
 0.880
Tbis_1291
Hypothetical protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
    
   0.875
Tbis_1295
PFAM: cytochrome c class I; KEGG: tbd:Tbd_2545 putative cytochrome c.
    
   0.875
Tbis_1296
PFAM: cytochrome c oxidase subunit III; KEGG: mpo:Mpop_4852 cytochrome o ubiquinol oxidase, subunit III.
    
 
 0.875
Tbis_0500
Hypothetical protein; KEGG: GI15809 gene product from transcript GI15809- RA.
    
   0.860
Tbis_1290
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
 
 0.851
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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