STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tbis_3481Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: afw:Anae109_1735 SARP family transcriptional regulator. (277 aa)    
Predicted Functional Partners:
Tbis_0191
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: scl:sce5225 protein kinase.
  
 0.955
Tbis_3102
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; transcriptional activator domain; Tetratricopeptide TPR_4; ATPase; SMART: AAA ATPase; KEGG: afw:Anae109_3667 ATPase-like protein.
  
 0.576
Tbis_2346
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B0885 putative lyase.
  
    0.532
Tbis_0924
PFAM: protein of unknown function DUF179; KEGG: tgr:Tgr7_2910 protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family.
  
    0.448
Tbis_0046
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcr:BCAH187_A5364 transcription antiterminator, LytR family.
  
    0.434
Tbis_2085
PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: pol:Bpro_3193 transcriptional regulator, LuxR family.
 
     0.404
Your Current Organism:
Thermobispora bispora
NCBI taxonomy Id: 469371
Other names: T. bispora DSM 43833, Thermobispora bispora ATCC 19993, Thermobispora bispora DSM 43833, Thermobispora bispora str. DSM 43833, Thermobispora bispora strain DSM 43833
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