STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cwoe_3826Transcriptional regulator, LuxR family; PFAM: metal-dependent phosphohydrolase HD sub domain; regulatory protein LuxR; SMART: regulatory protein LuxR; metal-dependent phosphohydrolase HD region; KEGG: mlo:mll1989 hypothetical protein. (519 aa)    
Predicted Functional Partners:
Cwoe_1770
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
 0.726
Cwoe_0829
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
 
 0.725
Cwoe_3133
Diguanylate cyclase; KEGG: xcv:XCV1610 putative sensor protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
 
 0.680
Cwoe_0701
Diguanylate cyclase; KEGG: mxa:MXAN_2997 HAMP domain/GAF domain/GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein.
 
 0.660
Cwoe_1192
KEGG: rpa:RPA3076 putative diguanylate cyclase (GGDEF); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
 
 0.636
Cwoe_3827
KEGG: rme:Rmet_2367 hypothetical protein.
 
     0.633
Cwoe_4930
Diguanylate cyclase; KEGG: xcv:XCV1398 putative sensor protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
 0.632
Cwoe_2458
Diguanylate cyclase; KEGG: dma:DMR_31090 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
 0.605
Cwoe_4490
KEGG: bvi:Bcep1808_3810 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
 
 0.593
Cwoe_5330
Diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ara:Arad_8490 sensory box/GGDEF family protein.
 
  
 0.575
Your Current Organism:
Conexibacter woesei DSM 14684
NCBI taxonomy Id: 469383
Other names: C. woesei DSM 14684, Conexibacter woesei str. DSM 14684, Conexibacter woesei strain DSM 14684
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