STRINGSTRING
IX87_05340 protein (Acinetobacter baumannii) - STRING interaction network
"IX87_05340" - Probable 5-dehydro-4-deoxyglucarate dehydratase in Acinetobacter baumannii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX87_05340Probable 5-dehydro-4-deoxyglucarate dehydratase; Catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DapA family (303 aa)    
Predicted Functional Partners:
AIL78084.1
Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method- Protein Homology (528 aa)
 
   
  0.865
AIL78088.1
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (515 aa)
 
   
  0.706
lutR
Predicted D-glucarate or D-galactorate regulator,GntR family; Derived by automated computational analysis using gene prediction method- Protein Homology (237 aa)
 
     
  0.705
LV38_01926
Putative glucarate transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (452 aa)
 
   
  0.541
AIL80890.1
Aldehyde dehydrogenase (NAD) domain protein; Derived by automated computational analysis using gene prediction method- Protein Homology (525 aa)
 
   
  0.490
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (273 aa)
 
   
  0.490
AIL80933.1
Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method- Protein Homology (524 aa)
 
   
  0.488
AIL80888.1
Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
 
          0.486
AIL77786.1
Aldehyde dehydrogenase (NADP(+)); Derived by automated computational analysis using gene prediction method- Protein Homology (526 aa)
 
   
  0.478
AIL80632.1
Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
 
          0.477
Your Current Organism:
Acinetobacter baumannii
NCBI taxonomy Id: 470
Other names: A. baumannii, ATCC 19606, Acinetobacter baumannii, Acinetobacter genomosp. 2, Acinetobacter genomospecies 2, Bacterium anitratum, CCUG 19096, CIP 70.34, DSM 30007, JCM 6841, NCCB 85021, NCTC 12156
Server load: low (9%) [HD]