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dacD protein (Acinetobacter baumannii) - STRING interaction network
"dacD" - D-alanyl-D-alanine carboxypeptidase in Acinetobacter baumannii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacDD-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S11 family (439 aa)    
Predicted Functional Partners:
mrcA
Penicillin-binding protein 1A; Derived by automated computational analysis using gene prediction method- Protein Homology (851 aa)
         
  0.903
AIL78727.1
Serine-type D-Ala-D-Ala carboxypeptidase; Penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S11 family (382 aa)
   
   
 
0.845
ftsI
Peptidoglycan D,D-transpeptidase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily (610 aa)
 
 
  0.626
AIL78773.1
NADH dehydrogenase family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (428 aa)
              0.574
IX87_09065
Serine protease; Derived by automated computational analysis using gene prediction method- Protein Homology (567 aa)
   
        0.561
mrcB
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits) (798 aa)
         
  0.542
mtgA
Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family (225 aa)
         
  0.502
AIL80132.1
Primosomal protein N; Derived by automated computational analysis using gene prediction method- Protein Homology (742 aa)
   
          0.492
AIL77404.1
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1010 aa)
 
   
  0.414
ybaB
Nucleoid-associated protein A7A65_01915; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection (109 aa)
   
        0.413
Your Current Organism:
Acinetobacter baumannii
NCBI taxonomy Id: 470
Other names: A. baumannii, ATCC 19606, Acinetobacter baumannii, Acinetobacter genomosp. 2, Acinetobacter genomospecies 2, Bacterium anitratum, CCUG 19096, CIP 70.34, DSM 30007, JCM 6841, NCCB 85021, NCTC 12156
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