STRINGSTRING
xerC protein (Acinetobacter baumannii) - STRING interaction network
"xerC" - Tyrosine recombinase XerC in Acinetobacter baumannii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase XerC; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ’phage’ integrase family. XerC subfamily (308 aa)    
Predicted Functional Partners:
AIL77404.1
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1010 aa)
   
 
  0.720
IX87_02210
Integrase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ’phage’ integrase family (319 aa)
   
 
  0.702
AIL80014.1
Recombinase XerD; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ’phage’ integrase family (306 aa)
   
 
0.607
AIL78886.1
Threonine transporter RhtB; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)
              0.585
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine (281 aa)
   
   
  0.529
AIL77534.1
NAD-dependent protein deacylase; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
           
  0.445
mfd
Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site (1153 aa)
   
   
  0.443
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (416 aa)
 
   
  0.417
ruvB
Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (334 aa)
   
   
  0.409
AIL80239.1
Sel1 repeat family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
           
  0.408
Your Current Organism:
Acinetobacter baumannii
NCBI taxonomy Id: 470
Other names: A. baumannii, ATCC 19606, Acinetobacter baumannii, Acinetobacter genomosp. 2, Acinetobacter genomospecies 2, Bacterium anitratum, CCUG 19096, CIP 70.34, DSM 30007, JCM 6841, NCCB 85021, NCTC 12156
Server load: low (16%) [HD]