STRINGSTRING
ghy protein (Acinetobacter baumannii) - STRING interaction network
"ghy" - Orf1 in Acinetobacter baumannii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ghyOrf1; Derived by automated computational analysis using gene prediction method- Protein Homology (296 aa)    
Predicted Functional Partners:
AIL79204.1
Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
 
          0.854
gtrOC2
Glycosyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)
 
   
  0.839
AIL79203.1
Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
 
          0.821
gtrOC4
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (344 aa)
 
   
  0.819
pda1
Putative polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)
 
   
  0.778
AIL79749.1
16S rRNA (Cytosine(967)-C(5))-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA (434 aa)
   
   
  0.700
AIL79202.1
Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
          0.665
metG
methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family (687 aa)
   
   
  0.543
AIL80090.1
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (441 aa)
   
        0.492
gtrOC3
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
 
   
  0.470
Your Current Organism:
Acinetobacter baumannii
NCBI taxonomy Id: 470
Other names: A. baumannii, ATCC 19606, Acinetobacter baumannii, Acinetobacter genomosp. 2, Acinetobacter genomospecies 2, Bacterium anitratum, CCUG 19096, CIP 70.34, DSM 30007, JCM 6841, NCCB 85021, NCTC 12156
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