rpsT protein (uncultured Termite group 1 bacterium phylotype)

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second shell of interactors

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Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

rpsT

30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (94 aa)

Predicted Functional Partners:

rplU

0.998

rpmF

0.998

rpmB

0.998

rplM

0.998

rpsO

0.996

rpmE

0.996

rpsP

0.995

rpmH

0.995

rpsU

0.995

TGRD_534

0.995

Your Current Organism:

uncultured Termite group 1 bacterium phylotype

NCBI taxonomy Id: 471821
Other names: u. Termite group 1 bacterium phylotype Rs-D17, uncultured Termite group 1 bacterium phylotype Rs-D17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TGRD_534	rplM	TGRD_534	TGRD_690	50S ribosomal protein L27.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
TGRD_534	rplU	TGRD_534	TGRD_535	50S ribosomal protein L27.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
TGRD_534	rpmB	TGRD_534	TGRD_608	50S ribosomal protein L27.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.995
TGRD_534	rpmE	TGRD_534	TGRD_183	50S ribosomal protein L27.	50S ribosomal protein L31; Binds the 23S rRNA.	0.995
TGRD_534	rpmF	TGRD_534	TGRD_606	50S ribosomal protein L27.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.996
TGRD_534	rpmH	TGRD_534	TGRD_046	50S ribosomal protein L27.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.990
TGRD_534	rpsO	TGRD_534	TGRD_166	50S ribosomal protein L27.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.996
TGRD_534	rpsP	TGRD_534	TGRD_022	50S ribosomal protein L27.	S16-like 30S ribosomal protein; Belongs to the bacterial ribosomal protein bS16 family.	0.998
TGRD_534	rpsT	TGRD_534	TGRD_370	50S ribosomal protein L27.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.995
TGRD_534	rpsU	TGRD_534	TGRD_241	50S ribosomal protein L27.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.995
rplM	TGRD_534	TGRD_690	TGRD_534	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L27.	0.998
rplM	rplU	TGRD_690	TGRD_535	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplM	rpmB	TGRD_690	TGRD_608	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.998
rplM	rpmE	TGRD_690	TGRD_183	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L31; Binds the 23S rRNA.	0.995
rplM	rpmF	TGRD_690	TGRD_606	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.998
rplM	rpmH	TGRD_690	TGRD_046	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.994
rplM	rpsO	TGRD_690	TGRD_166	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.998
rplM	rpsP	TGRD_690	TGRD_022	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	S16-like 30S ribosomal protein; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rplM	rpsT	TGRD_690	TGRD_370	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.998
rplM	rpsU	TGRD_690	TGRD_241	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.997