STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcur_0128ATPase involved in chromosome partitioning-like protein; KEGG: TP23; basic proline-rich protein. (665 aa)    
Predicted Functional Partners:
Tcur_0272
KEGG: dno:DNO_1166 hypothetical protein.
  
 
 0.734
Tcur_3691
TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: aeh:Mlg_2516 RNA polymerase, sigma 70 subunit, RpoD.
 
  
 0.578
Tcur_0608
TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: hypothetical protein.
 
  
 0.540
esxA
Hypothetical protein; May help regulate assembly and function of the type VII secretion system (T7SS). EsxA disassembles pre-formed EccC-EsxB multimers, possibly by making EccC-EsxA-EsxB trimers instead of EccC-EsxB-EsxB-EccC tetramers.
   
 
 0.505
Tcur_0866
PFAM: proteinase inhibitor I16 subtilisin-type inhibitor; KEGG: hypothetical protein.
 
  
 0.457
Tcur_1687
KEGG: hypothetical protein.
  
   
 0.455
Tcur_3025
PFAM: GCN5-related N-acetyltransferase; KEGG: ppg:PputGB1_3674 GCN5-related N- acetyltransferase.
  
     0.432
Tcur_4144
Hypothetical protein; KEGG: GE20743 gene product from transcript GE20743- RA.
  
  
 0.425
Tcur_1100
SMART: AAA ATPase; KEGG: rsq:Rsph17025_4376 type IV secretion/conjugal transfer ATPase.
 
     0.418
Tcur_1912
PFAM: N-6 DNA methylase; KEGG: ecw:EcE24377A_0286 N4/N6-methyltransferase family protein.
 
 
   0.403
Your Current Organism:
Thermomonospora curvata
NCBI taxonomy Id: 471852
Other names: T. curvata DSM 43183, Thermomonospora curvata DSM 43183, Thermomonospora curvata IFO 15933, Thermomonospora curvata JCM 3096, Thermomonospora curvata NBRC 15933, Thermomonospora curvata str. DSM 43183, Thermomonospora curvata strain DSM 43183
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