STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcur_1545Conserved hypothetical protein; KEGG: pca:Pcar_2585 Fe-S oxidoreductase. (271 aa)    
Predicted Functional Partners:
Tcur_1544
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_2585 Fe-S oxidoreductase.
    0.989
Tcur_3676
Hypothetical protein.
  
     0.744
Tcur_1546
Ribonuclease, Rne/Rng family; KEGG: gme:Gmet_3192 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; SMART: RNA binding S1 domain protein.
       0.541
Tcur_1541
TIGRFAM: rod shape-determining protein MreD.
 
     0.516
Tcur_1543
TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: bba:Bd2461 rod shape-determining protein; Belongs to the SEDS family.
       0.467
Tcur_1540
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.450
Tcur_1542
TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: sat:SYN_00551 cell elongation specific D,D- transpeptidase.
       0.450
rimO
MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
 
     0.406
Your Current Organism:
Thermomonospora curvata
NCBI taxonomy Id: 471852
Other names: T. curvata DSM 43183, Thermomonospora curvata DSM 43183, Thermomonospora curvata IFO 15933, Thermomonospora curvata JCM 3096, Thermomonospora curvata NBRC 15933, Thermomonospora curvata str. DSM 43183, Thermomonospora curvata strain DSM 43183
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