STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcur_3107Hypothetical protein; KEGG: scl:sce1440 putative terpene cyclase. (347 aa)    
Predicted Functional Partners:
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.653
Tcur_4806
Hypothetical protein.
 
 
   0.636
Tcur_0781
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: predicted NTPase (NACHT family).
 
     0.628
Tcur_4586
PFAM: NACHT nucleoside triphosphatase; KEGG: pmy:Pmen_1048 signal transduction protein.
 
     0.514
Tcur_3880
KEGG: hypothetical protein.
  
    0.470
Tcur_1950
Putative signal transduction protein with Nacht domain; KEGG: ret:RHE_PD00010 hypothetical protein.
  
     0.468
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.466
Tcur_4523
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: bid:Bind_1912 TPR repeat-containing protein.
  
     0.450
Tcur_4905
PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: bid:Bind_1912 TPR repeat-containing protein.
  
     0.435
Tcur_0361
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ISC; inositol phosphophingolipids phospholipase C.
  
     0.424
Your Current Organism:
Thermomonospora curvata
NCBI taxonomy Id: 471852
Other names: T. curvata DSM 43183, Thermomonospora curvata DSM 43183, Thermomonospora curvata IFO 15933, Thermomonospora curvata JCM 3096, Thermomonospora curvata NBRC 15933, Thermomonospora curvata str. DSM 43183, Thermomonospora curvata strain DSM 43183
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