STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcur_4331PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein. (440 aa)    
Predicted Functional Partners:
Tcur_4329
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
 
     0.951
Tcur_4330
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related.
 
    0.851
Tcur_4332
Hypothetical protein.
       0.773
Tcur_4333
Hypothetical protein.
       0.773
Tcur_4334
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: tmz:Tmz1t_1954 two component transcriptional regulator, LuxR family.
       0.492
Tcur_4328
Hypothetical protein.
     
 0.477
Tcur_4643
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.456
Tcur_0424
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ppd:Ppro_1907 XRE family transcriptional regulator.
  
     0.435
Your Current Organism:
Thermomonospora curvata
NCBI taxonomy Id: 471852
Other names: T. curvata DSM 43183, Thermomonospora curvata DSM 43183, Thermomonospora curvata IFO 15933, Thermomonospora curvata JCM 3096, Thermomonospora curvata NBRC 15933, Thermomonospora curvata str. DSM 43183, Thermomonospora curvata strain DSM 43183
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