STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0125SMP-30/Gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region. (286 aa)    
Predicted Functional Partners:
Bcav_3944
SMP-30/Gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region.
  
  
 
0.928
Bcav_1452
SMP-30/Gluconolaconase/LRE domain protein; PFAM: SMP-30/Gluconolaconase/LRE-like region.
  
  
 
0.925
Bcav_2981
PFAM: Bacterial transcriptional regulator; IclR helix-turn-helix domain.
      0.895
Bcav_3711
PFAM: Bacterial transcriptional regulator; IclR helix-turn-helix domain.
      0.840
Bcav_0124
PFAM: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain.
 
     0.684
Bcav_0122
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase.
  
    0.634
Bcav_0123
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
       0.633
Bcav_0126
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase.
  
    0.538
Bcav_0231
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region.
  
     0.504
Bcav_1462
Transcriptional regulator, TrmB; PFAM: Bacterial transcriptional regulator; IclR helix-turn-helix domain.
      0.486
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.