node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bcav_0002 | Bcav_0480 | Bcav_0002 | Bcav_0480 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | 0.894 |
Bcav_0002 | Bcav_0662 | Bcav_0002 | Bcav_0662 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | AAA ATPase. | 0.999 |
Bcav_0002 | Bcav_3511 | Bcav_0002 | Bcav_3511 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain. | 0.940 |
Bcav_0002 | lig | Bcav_0002 | Bcav_0272 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.894 |
Bcav_0002 | polA | Bcav_0002 | Bcav_2200 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.997 |
Bcav_0480 | Bcav_0002 | Bcav_0480 | Bcav_0002 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.894 |
Bcav_0480 | Bcav_0491 | Bcav_0480 | Bcav_0491 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | PFAM: Eukaryotic and archaeal DNA primase small subunit; TIGRFAM: DNA polymerase LigD, polymerase domain. | 0.984 |
Bcav_0480 | Bcav_0662 | Bcav_0480 | Bcav_0662 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | AAA ATPase. | 0.602 |
Bcav_0480 | Bcav_0664 | Bcav_0480 | Bcav_0664 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | DNA polymerase LigD, polymerase domain protein; PFAM: Eukaryotic and archaeal DNA primase small subunit; TIGRFAM: DNA ligase D; DNA polymerase LigD, polymerase domain. | 0.984 |
Bcav_0480 | Bcav_3511 | Bcav_0480 | Bcav_3511 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain. | 0.708 |
Bcav_0480 | Bcav_4169 | Bcav_0480 | Bcav_4169 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | PFAM: Eukaryotic and archaeal DNA primase small subunit; TIGRFAM: DNA polymerase LigD, polymerase domain. | 0.978 |
Bcav_0480 | ku | Bcav_0480 | Bcav_0652 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.944 |
Bcav_0480 | lig | Bcav_0480 | Bcav_0272 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.613 |
Bcav_0480 | ligA | Bcav_0480 | Bcav_1375 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.779 |
Bcav_0480 | polA | Bcav_0480 | Bcav_2200 | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.760 |
Bcav_0491 | Bcav_0480 | Bcav_0491 | Bcav_0480 | PFAM: Eukaryotic and archaeal DNA primase small subunit; TIGRFAM: DNA polymerase LigD, polymerase domain. | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | 0.984 |
Bcav_0491 | ku | Bcav_0491 | Bcav_0652 | PFAM: Eukaryotic and archaeal DNA primase small subunit; TIGRFAM: DNA polymerase LigD, polymerase domain. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.883 |
Bcav_0491 | lig | Bcav_0491 | Bcav_0272 | PFAM: Eukaryotic and archaeal DNA primase small subunit; TIGRFAM: DNA polymerase LigD, polymerase domain. | DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.883 |
Bcav_0662 | Bcav_0002 | Bcav_0662 | Bcav_0002 | AAA ATPase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.999 |
Bcav_0662 | Bcav_0480 | Bcav_0662 | Bcav_0480 | AAA ATPase. | PFAM: ATP dependent DNA ligase C terminal region; ATP dependent DNA ligase domain. | 0.602 |