STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0276PFAM: Bacterial extracellular solute-binding protein. (439 aa)    
Predicted Functional Partners:
Bcav_0278
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.929
Bcav_0277
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.927
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
    0.777
Bcav_1296
PFAM: Bacterial extracellular solute-binding protein.
  
     0.750
Bcav_1708
PFAM: Bacterial extracellular solute-binding protein.
  
     0.736
Bcav_0275
PFAM: Inosine-uridine preferring nucleoside hydrolase.
 
     0.671
Bcav_3941
PFAM: Bacterial extracellular solute-binding protein.
  
     0.667
Bcav_0310
PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.661
Bcav_3820
Pyrrolo-quinoline quinone.
  
     0.660
Bcav_2603
Extracellular solute-binding protein family 1; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
     0.638
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.