STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1242PFAM: Lipoprotein LpqB beta-propeller domain; Sporulation and spore germination. (586 aa)    
Predicted Functional Partners:
Bcav_1241
PFAM: HAMP domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.979
Bcav_1240
Two component transcriptional regulator, winged helix family; PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain.
     
 0.773
Bcav_1243
Conserved hypothetical protein; PFAM: Phosphoribosyl transferase domain.
 
     0.718
Bcav_1800
Conserved hypothetical protein.
  
     0.703
Bcav_1239
Integral membrane protein.
 
     0.699
Bcav_4209
Conserved hypothetical protein.
  
     0.656
Bcav_2388
Conserved hypothetical protein.
 
 
   0.648
Bcav_1965
Conserved hypothetical protein.
  
     0.627
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
     0.595
Bcav_1208
Conserved hypothetical protein.
 
     0.593
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.