Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bcav_1070 | Bcav_2683 | Bcav_1070 | Bcav_2683 | PFAM: NmrA-like family. | PFAM: NmrA-like family. | 0.928 |
Bcav_1070 | menG | Bcav_1070 | Bcav_3232 | PFAM: NmrA-like family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.900 |
Bcav_2683 | Bcav_1070 | Bcav_2683 | Bcav_1070 | PFAM: NmrA-like family. | PFAM: NmrA-like family. | 0.928 |
Bcav_2683 | menG | Bcav_2683 | Bcav_3232 | PFAM: NmrA-like family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.900 |
Bcav_3215 | Bcav_3230 | Bcav_3215 | Bcav_3230 | PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family. | 0.845 |
Bcav_3215 | Bcav_3231 | Bcav_3215 | Bcav_3231 | PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | CsbD family protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family. | 0.410 |
Bcav_3215 | Bcav_3233 | Bcav_3215 | Bcav_3233 | PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | Isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases. | 0.539 |
Bcav_3215 | dxs | Bcav_3215 | Bcav_1958 | PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.446 |
Bcav_3215 | menG | Bcav_3215 | Bcav_3232 | PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.765 |
Bcav_3230 | Bcav_3215 | Bcav_3230 | Bcav_3215 | PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family. | PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | 0.845 |
Bcav_3230 | Bcav_3231 | Bcav_3230 | Bcav_3231 | PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family. | CsbD family protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family. | 0.420 |
Bcav_3230 | Bcav_3233 | Bcav_3230 | Bcav_3233 | PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family. | Isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases. | 0.428 |
Bcav_3230 | menG | Bcav_3230 | Bcav_3232 | PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.599 |
Bcav_3231 | Bcav_3215 | Bcav_3231 | Bcav_3215 | CsbD family protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family. | PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | 0.410 |
Bcav_3231 | Bcav_3230 | Bcav_3231 | Bcav_3230 | CsbD family protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family. | PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family. | 0.420 |
Bcav_3231 | menG | Bcav_3231 | Bcav_3232 | CsbD family protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.488 |
Bcav_3233 | Bcav_3215 | Bcav_3233 | Bcav_3215 | Isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases. | PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | 0.539 |
Bcav_3233 | Bcav_3230 | Bcav_3233 | Bcav_3230 | Isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases. | PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family. | 0.428 |
Bcav_3233 | menA | Bcav_3233 | Bcav_3248 | Isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases. | 1,4-dihydroxy-2-naphthoateoctaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.748 |
Bcav_3233 | menC | Bcav_3233 | Bcav_3236 | Isochorismate synthase; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases. | Mandelate racemase/muconate lactonizing protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.801 |
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