Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Bcav_0372 | Bcav_2078 | Bifunctional protein (secreted sugar binding protein/sugar hydrolase). | PFAM: Phosphotransferase enzyme family. | 0.523 |
Bcav_0372 | Bcav_3380 | Bifunctional protein (secreted sugar binding protein/sugar hydrolase). | Conserved hypothetical protein. | 0.570 |
Bcav_2078 | Bcav_0372 | PFAM: Phosphotransferase enzyme family. | Bifunctional protein (secreted sugar binding protein/sugar hydrolase). | 0.523 |
Bcav_2078 | Bcav_3380 | PFAM: Phosphotransferase enzyme family. | Conserved hypothetical protein. | 0.419 |
Bcav_2866 | Bcav_3380 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.421 |
Bcav_3379 | Bcav_3380 | PFAM: Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain; Beta galactosidase small chain; Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain. | Conserved hypothetical protein. | 0.471 |
Bcav_3380 | Bcav_0372 | Conserved hypothetical protein. | Bifunctional protein (secreted sugar binding protein/sugar hydrolase). | 0.570 |
Bcav_3380 | Bcav_2078 | Conserved hypothetical protein. | PFAM: Phosphotransferase enzyme family. | 0.419 |
Bcav_3380 | Bcav_2866 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.421 |
Bcav_3380 | Bcav_3379 | Conserved hypothetical protein. | PFAM: Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain; Beta galactosidase small chain; Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain. | 0.471 |
Bcav_3380 | Bcav_3381 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.535 |
Bcav_3381 | Bcav_3380 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.535 |