STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3398Glycoside hydrolase family 35; PFAM: Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family. (837 aa)    
Predicted Functional Partners:
Bcav_3379
PFAM: Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain; Beta galactosidase small chain; Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain.
   
 0.910
Bcav_1278
PFAM: Aldose 1-epimerase.
  
 
 0.905
Bcav_1316
PFAM: Beta-galactosidase; Beta-galactosidase trimerisation domain; Beta-galactosidase C-terminal domain.
    
  0.902
Bcav_3076
PFAM: Beta-galactosidase trimerisation domain; Beta-galactosidase C-terminal domain; Beta-galactosidase.
    
  0.902
Bcav_3298
PFAM: Beta-galactosidase; Beta-galactosidase trimerisation domain; Beta-galactosidase C-terminal domain.
    
  0.902
Bcav_3322
PFAM: Beta-galactosidase; Beta-galactosidase trimerisation domain; Beta-galactosidase C-terminal domain.
    
  0.902
Bcav_3576
Conserved hypothetical protein.
 
   
 0.754
Bcav_0130
Glycoside hydrolase clan GH-D; PFAM: Melibiase.
 
  
 0.732
Bcav_0053
Putative alpha-galactosidase.
 
 
 0.710
Bcav_0943
Glycoside hydrolase clan GH-D; PFAM: Melibiase.
    
 0.665
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
Server load: low (28%) [HD]