STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_3678PFAM: Endonuclease/Exonuclease/phosphatase family. (437 aa)    
Predicted Functional Partners:
Bcav_3675
PFAM: Bacterial extracellular solute-binding protein.
       0.623
Bcav_3676
PFAM: Binding-protein-dependent transport system inner membrane component.
       0.623
Bcav_3677
PFAM: Binding-protein-dependent transport system inner membrane component.
       0.623
Bcav_3480
PFAM: Endonuclease/Exonuclease/phosphatase family.
  
     0.604
Bcav_3673
PFAM: Bacterial transcriptional regulator; IclR helix-turn-helix domain.
       0.574
Bcav_3674
Membrane protein; PFAM: Glucose inhibited division protein A.
       0.574
Bcav_3679
Hypothetical protein.
       0.536
Bcav_3680
PFAM: Prokaryotic cytochrome b561.
     
 0.464
Bcav_1440
Exo-alpha-sialidase.
  
     0.434
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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