STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0290PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nha:Nham_3678 glyoxalase/bleomycin resistance protein/dioxygenase. (165 aa)    
Predicted Functional Partners:
Dfer_0291
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_2741 hypothetical protein.
       0.542
Dfer_0354
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fjo:Fjoh_4183 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.522
Dfer_1449
PFAM: Luciferase-like monooxygenase; KEGG: chu:CHU_0428 oxidoreductase (coenzyme F420- dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase).
  
  
 0.505
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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