STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0615PFAM: TonB-dependent receptor plug; KEGG: sru:SRU_2859 hypothetical protein. (1098 aa)    
Predicted Functional Partners:
Dfer_0616
KEGG: sru:SRU_2860 hypothetical protein.
 
     0.928
Dfer_3219
KEGG: sru:SRU_2860 hypothetical protein.
  
     0.775
Dfer_4310
KEGG: hypothetical protein.
  
     0.754
Dfer_3217
KEGG: noc:Noc_1356 hypothetical protein.
  
     0.736
Dfer_0340
KEGG: fjo:Fjoh_4499 hypothetical protein.
 
     0.695
Dfer_4718
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3964 hypothetical protein.
  
     0.657
Dfer_2268
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_0510 hypothetical protein.
  
     0.654
Dfer_2218
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_0510 hypothetical protein.
  
     0.652
Dfer_3216
PFAM: metallophosphoesterase; KEGG: swo:Swol_1992 hypothetical protein.
  
     0.639
Dfer_4312
PFAM: Two component regulator propeller; KEGG: hypothetical protein.
  
     0.630
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.