STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0935KEGG: fjo:Fjoh_3547 hypothetical protein. (113 aa)    
Predicted Functional Partners:
Dfer_0934
KEGG: fjo:Fjoh_4359 hypothetical protein.
 
     0.947
Dfer_0937
KEGG: fjo:Fjoh_4356 hypothetical protein.
 
     0.798
Dfer_0940
PFAM: TraJ family protein conjugative transposon; KEGG: fjo:Fjoh_3541 TraJ family protein conjugative transposon.
 
     0.798
Dfer_0941
KEGG: fjo:Fjoh_3540 hypothetical protein.
 
     0.798
Dfer_0943
KEGG: fjo:Fjoh_4351 hypothetical protein.
 
     0.798
Dfer_0944
KEGG: fjo:Fjoh_4350 hypothetical protein.
 
     0.791
Dfer_2358
KEGG: fjo:Fjoh_4350 hypothetical protein.
 
     0.791
Dfer_4196
PFAM: Relaxase/mobilization nuclease family protein; KEGG: fjo:Fjoh_3654 relaxase/mobilization nuclease family protein.
  
     0.775
Dfer_2365
TIGRFAM: phage/plasmid-related protein TIGR03299; KEGG: fjo:Fjoh_2980 hypothetical protein.
  
     0.699
Dfer_0949
TIGRFAM: phage/plasmid-related protein TIGR03299; KEGG: fjo:Fjoh_2980 hypothetical protein.
  
     0.696
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.