Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Dfer_0549 | Dfer_0977 | Transcriptional regulator, AraC family; KEGG: amr:AM1_4991 methylated DNA-protein cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type. | PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_2967 DNA repair system protein. | 0.455 |
Dfer_0751 | Dfer_0977 | PFAM: Ketopantoate reductase ApbA/PanE domain protein; KEGG: reu:Reut_B4967 ketopantoate reductase ApbA/PanE. | PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_2967 DNA repair system protein. | 0.745 |
Dfer_0976 | Dfer_0977 | RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: gfo:GFO_3248 RNA polymerase ECF-type sigma factor. | PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_2967 DNA repair system protein. | 0.553 |
Dfer_0977 | Dfer_0549 | PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_2967 DNA repair system protein. | Transcriptional regulator, AraC family; KEGG: amr:AM1_4991 methylated DNA-protein cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type. | 0.455 |
Dfer_0977 | Dfer_0751 | PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_2967 DNA repair system protein. | PFAM: Ketopantoate reductase ApbA/PanE domain protein; KEGG: reu:Reut_B4967 ketopantoate reductase ApbA/PanE. | 0.745 |
Dfer_0977 | Dfer_0976 | PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_2967 DNA repair system protein. | RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: gfo:GFO_3248 RNA polymerase ECF-type sigma factor. | 0.553 |