STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1023KEGG: chu:CHU_2261 hypothetical protein. (187 aa)    
Predicted Functional Partners:
Dfer_1022
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: chu:CHU_2259 cyclic nucleotide binding regulatory protein.
 
     0.877
Dfer_5145
SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_1807 hypothetical protein.
  
     0.594
Dfer_1021
Trehalose-phosphatase; KEGG: chu:CHU_0400 glycosyltransferase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase family 20; Haloacid dehalogenase domain protein hydrolase type 3; trehalose- phosphatase.
       0.503
Dfer_0096
KEGG: fps:FP0577 hypothetical protein.
  
     0.461
Dfer_0292
PFAM: aminoglycoside phosphotransferase; KEGG: amr:AM1_0146 phosphotransferase family protein, putative.
  
     0.435
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.