STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1471PFAM: regulatory protein LysR; KEGG: fjo:Fjoh_0758 LysR family transcriptional regulator. (307 aa)    
Predicted Functional Partners:
Dfer_1470
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: fjo:Fjoh_4617 NAD(P)H dehydrogenase (quinone).
 
   
 0.891
Dfer_5479
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: chu:CHU_3776 glutamate synthase (NADH) large subunit.
  
  
 0.542
Dfer_5153
PFAM: fatty acid desaturase; KEGG: chu:CHU_1063 fatty-acid desaturase.
  
     0.491
Dfer_1472
KEGG: fjo:Fjoh_3890 hypothetical protein.
       0.465
Dfer_2198
PFAM: Amidohydrolase 3; KEGG: spe:Spro_0096 deaminase.
  
   
 0.413
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.