STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1539PFAM: protein of unknown function DUF214; KEGG: gfo:GFO_0712 FtsX family membrane protein (predicted permease). (804 aa)    
Predicted Functional Partners:
Dfer_4838
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bfs:BF2459 putative ABC transport system, ATP- binding protein.
 
 
 0.986
Dfer_4898
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gfo:GFO_0709 ABC-type transporter ATP-binding protein.
 
 
 0.980
Dfer_5611
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bvu:BVU_2346 ABC transporter ATP-binding protein.
 
 
 0.965
Dfer_3760
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fps:FP0584 ABC transporter ATPase.
 
 
 0.954
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.946
Dfer_3619
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mms:mma_3207 ABC transporter, ATP-binding protein.
  
 
 0.946
Dfer_5709
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gfo:GFO_1949 ABC-type transporter ATP-binding protein.
  
 
 0.946
Dfer_4837
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gfo:GFO_0717 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.864
Dfer_4824
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sde:Sde_0326 response regulator receiver domain protein (CheY-like).
 
    0.782
Dfer_5609
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bvu:BVU_2343 ABC transporter permease.
 
 
 0.568
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.