STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1603Levanase; KEGG: gfo:GFO_0009 glycosyl hydrolase, family 32; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; Belongs to the glycosyl hydrolase 32 family. (507 aa)    
Predicted Functional Partners:
Dfer_1600
PFAM: PfkB domain protein; KEGG: gfo:GFO_0012 PfkB family carbohydrate kinase.
 
 0.975
Dfer_5716
PFAM: ROK family protein; KEGG: cts:Ctha_1950 ROK family protein.
  
 
 0.917
xylA
KEGG: cja:CJA_3061 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
     
 0.910
Dfer_1604
Two component transcriptional regulator, AraC family; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; periplasmic binding protein/LacI transcriptional regulator; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: bvu:BVU_1666 putative two-component system sensor histidine kinase/response regulator, hybrid.
 
  
 0.869
Dfer_1602
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_0011 SusD/RagB family protein containing tetratricopeptide repeats.
 
     0.847
Dfer_1601
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gfo:GFO_0010 TonB-dependent outer membrane receptor.
 
     0.759
Dfer_1599
Sugar transporter; KEGG: gfo:GFO_0008 major facilitator superfamily permease-possibly sugar transporter; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
   
 0.689
Dfer_2757
TIGRFAM: beta-phosphoglucomutase; beta- phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pmo:Pmob_0141 beta-phosphoglucomutase.
    
 0.486
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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