STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1779PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3918 hypothetical protein. (485 aa)    
Predicted Functional Partners:
Dfer_1778
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_0190 hypothetical protein.
 
 
   0.937
Dfer_1723
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_0190 hypothetical protein.
  
 
   0.798
Dfer_2262
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_0511 hypothetical protein.
  
 
   0.792
Dfer_4269
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pdi:BDI_3963 hypothetical protein.
  
 
   0.789
Dfer_1584
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_0190 hypothetical protein.
 
 
   0.786
Dfer_2231
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4645 TonB-dependent receptor, plug.
  
 
   0.777
Dfer_1780
PFAM: sulfatase; KEGG: pat:Patl_2695 sulfatase.
       0.773
Dfer_2137
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_0190 hypothetical protein.
  
     0.768
Dfer_0774
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_0190 hypothetical protein.
  
     0.766
Dfer_1601
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gfo:GFO_0010 TonB-dependent outer membrane receptor.
  
 
   0.763
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.