STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2138PFAM: ribulose bisphosphate carboxylase large chain; KEGG: acr:Acry_1067 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family. (420 aa)    
Predicted Functional Partners:
Dfer_2139
PFAM: type III effector Hrp-dependent outers; KEGG: acr:Acry_1068 type III effector Hrp-dependent outer protein.
 
   
 0.956
Dfer_3630
KEGG: chu:CHU_1212 hexapeptide repeat-containing protein acetyltransferase.
    
 
 0.832
Dfer_4073
KEGG: chu:CHU_3658 acetyltransferase/carbonic anhydrase.
    
 
 0.832
Dfer_2141
PFAM: Asp/Glu/hydantoin racemase; KEGG: ret:RHE_PF00355 hypothetical protein.
 
     0.785
Dfer_2396
PFAM: class II aldolase/adducin family protein; KEGG: fjo:Fjoh_1120 L-ribulose-5-phosphate 4- epimerase.
  
  
 0.679
Dfer_2804
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.634
pgk
PFAM: phosphoglycerate kinase; KEGG: chu:CHU_2229 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.596
Dfer_1094
KEGG: chu:CHU_0274 O-acetylhomoserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase.
   
  
 0.592
Dfer_2135
KEGG: fjo:Fjoh_4089 hypothetical protein.
 
     0.534
Dfer_2133
PFAM: protein of unknown function DUF1680; KEGG: fjo:Fjoh_4097 hypothetical protein.
 
     0.533
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.