STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2863KEGG: sec:SC1264 hypothetical protein. (371 aa)    
Predicted Functional Partners:
Dfer_1887
KEGG: rba:RB7871 signal peptide.
  
     0.674
Dfer_2147
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bth:BT_1031 hypothetical protein.
     0.665
Dfer_4491
KEGG: aau:AAur_2666 hypothetical protein.
  
     0.664
Dfer_1900
Hypothetical protein; KEGG: asu:Asuc_1960 glycosyl hydrolase BNR repeat- containing glycosyl hydrolase.
 
   
 0.649
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: chu:CHU_1307 glycerol-3-phosphate dehydrogenase (NAD+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.598
Dfer_4493
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase.
  
     0.588
Dfer_2596
PFAM: coagulation factor 5/8 type domain protein; KEGG: sus:Acid_1398 coagulation factor 5/8 type domain-containing protein.
     0.569
Dfer_1899
KEGG: ret:RHE_CH01081 hypothetical protein.
 
   
 0.542
Dfer_1894
PFAM: oxidoreductase domain protein; KEGG: gfo:GFO_2025 oxidoreductase.
  
     0.528
Dfer_3217
KEGG: noc:Noc_1356 hypothetical protein.
 
     0.506
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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