STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3020Exo-alpha-sialidase; KEGG: sma:SAV_5934 neuramidase. (388 aa)    
Predicted Functional Partners:
Dfer_3517
KEGG: sus:Acid_2651 putative O-antigen related protein.
  
  0.969
Dfer_3021
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: bvu:BVU_4140 sialate O-acetylesterase.
     0.935
Dfer_3023
PFAM: dihydrodipicolinate synthetase; KEGG: rba:RB3352 N-acetylneuraminate lyase; Belongs to the DapA family.
 
   
 0.933
Dfer_1900
Hypothetical protein; KEGG: asu:Asuc_1960 glycosyl hydrolase BNR repeat- containing glycosyl hydrolase.
  
  
  0.927
Dfer_1855
PFAM: Carbohydrate binding family 6; KEGG: bth:BT_3133 alpha-galactosidase.
     
  0.900
Dfer_1899
KEGG: ret:RHE_CH01081 hypothetical protein.
     
  0.900
Dfer_5180
PFAM: glycoside hydrolase clan GH-D; KEGG: lac:LBA1438 alpha-galactosidase.
     
  0.900
Dfer_3022
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; Kelch repeat-containing protein; Kelch repeat protein; KEGG: rba:RB3349 putative sodium:solute symporter.
 
     0.854
Dfer_3024
PFAM: RagB/SusD domain protein; KEGG: bfs:BF1721 hypothetical protein.
 
     0.806
Dfer_3025
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF1710 hypothetical protein.
 
     0.793
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.