STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3085TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: chu:CHU_2837 ATP-dependent DNA ligase. (299 aa)    
Predicted Functional Partners:
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.969
Dfer_0365
TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; DNA primase small subunit; ATP dependent DNA ligase domain protein; KEGG: chu:CHU_2837 ATP-dependent DNA ligase.
 
  
0.917
Dfer_0913
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: chu:CHU_2061 exodeoxyribonuclease III (exonuclease III).
 
    0.765
Dfer_2159
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: chu:CHU_2061 exodeoxyribonuclease III (exonuclease III).
 
    0.762
Dfer_3086
PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: sru:SRU_2812 chitinase A1 precursor; Belongs to the glycosyl hydrolase 18 family.
       0.608
Dfer_5574
PFAM: protein of unknown function DUF892; KEGG: fjo:Fjoh_2659 hypothetical protein.
 
     0.564
Dfer_4833
PFAM: protein of unknown function DUF892; KEGG: fjo:Fjoh_3365 hypothetical protein.
 
     0.514
Dfer_3334
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: sus:Acid_3563 ATP dependent DNA ligase.
   
 0.448
Dfer_3083
Hypothetical protein.
       0.445
Dfer_3082
Hypothetical protein.
       0.406
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.