STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3164Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: gka:GK1896 sugar ABC transporter (sugar- binding protein). (310 aa)    
Predicted Functional Partners:
Dfer_3165
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: gka:GK1893 sugar ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 0.999
Dfer_3166
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1894 sugar ABC transporter ATP-binding protein.
 0.996
Dfer_2121
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: rba:RB3497 ribose transport system permease protein RbsC.
 
 0.994
Dfer_2122
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB3496 ribose ABC transporter, ATP- binding protein RbsA.
 
 0.948
Dfer_5761
KEGG: chu:CHU_2784 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein.
  
 
 0.914
Dfer_0171
KEGG: fjo:Fjoh_3925 GAF sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein.
 
 
 0.912
Dfer_3325
KEGG: cts:Ctha_0019 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver.
  
 
 0.912
Dfer_1135
KEGG: chu:CHU_2080 sensor histidine kinase/response regulator fusion protein; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; GAF domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
   
 
 0.909
Dfer_0393
Histidine kinase; KEGG: fjo:Fjoh_3354 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein.
   
 
 0.904
Dfer_1947
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; SMART: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: fjo:Fjoh_3862 histidine kinase.
 
    
 0.902
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.