STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_3735PFAM: glycogen synthase; KEGG: chu:CHU_1581 glycogen synthase, glycosyltransferase family 3 protein. (604 aa)    
Predicted Functional Partners:
Dfer_0213
PFAM: glycoside hydrolase family 13 domain protein; alpha amylase all-beta; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mes:Meso_2421 glycoside hydrolase, family 13- like.
  
 0.938
Dfer_3228
KEGG: amu:Amuc_0235 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
 
 
 0.933
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.929
glgB-2
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.929
Dfer_1021
Trehalose-phosphatase; KEGG: chu:CHU_0400 glycosyltransferase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase family 20; Haloacid dehalogenase domain protein hydrolase type 3; trehalose- phosphatase.
  
 0.926
Dfer_4625
TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: tpd:Teth39_1556 UTP-glucose-1-phosphate uridylyltransferase.
    
 0.904
glgE
Alpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
    
  0.903
Dfer_4558
PFAM: Starch synthase catalytic domain protein; KEGG: chu:CHU_3836 glycogen synthase-related protein.
     
 0.903
Dfer_3042
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase family 2; glycoside hydrolase family 2 TIM barrel; KEGG: scl:sce4866 integral membrane glycosyltransferase.
     
  0.900
Dfer_4603
TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: gur:Gura_3790 glucose-1-phosphate cytidylyltransferase.
  
 0.831
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.