STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4139Beta-galactosidase; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: tle:Tlet_1296 glycoside hydrolase family protein. (1129 aa)    
Predicted Functional Partners:
Dfer_5180
PFAM: glycoside hydrolase clan GH-D; KEGG: lac:LBA1438 alpha-galactosidase.
 
 
 0.963
Dfer_2820
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.923
Dfer_1855
PFAM: Carbohydrate binding family 6; KEGG: bth:BT_3133 alpha-galactosidase.
  
 
 0.908
Dfer_5039
PFAM: Aldose 1-epimerase; KEGG: chu:CHU_0656 aldose-1-epimerase.
  
 
 0.907
Dfer_3960
PFAM: ROK family protein; KEGG: chu:CHU_1875 glucokinase.
     
 0.903
Dfer_4328
PFAM: ROK family protein; KEGG: bfr:BF1751 transcriptional regulator.
     
 0.903
Dfer_5601
Glucan endo-1,6-beta-glucosidase; PFAM: glycoside hydrolase family 30; KEGG: rfr:Rfer_1106 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 30 family.
  
 
 0.902
xylA
KEGG: cja:CJA_3061 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
    
 0.813
Dfer_3313
PFAM: FAD linked oxidase domain protein; D- arabinono-14-lactone oxidase; KEGG: hypothetical protein.
     
  0.800
Dfer_2668
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: fjo:Fjoh_3520 glycerophosphoryl diester phosphodiesterase.
 
 
    0.770
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.