STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4585KEGG: pdi:BDI_2330 hypothetical protein. (498 aa)    
Predicted Functional Partners:
Dfer_4586
KEGG: pdi:BDI_2330 hypothetical protein.
 
    
0.644
Dfer_2774
KEGG: sus:Acid_4389 hypothetical protein.
  
     0.619
Dfer_4089
PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: chu:CHU_1051 endoglucanase-related protein.
  
    0.613
Dfer_5106
Membrane protein-like protein; KEGG: dth:DICTH_0563 hypothetical protein.
  
     0.606
Dfer_0218
KEGG: bfs:BF1643 hypothetical protein.
  
     0.601
Dfer_4730
PFAM: Colicin V production protein; KEGG: chu:CHU_3405 hypothetical protein.
  
     0.589
Dfer_2770
Hypothetical protein; KEGG: fjo:Fjoh_0352 lipopolysaccharide biosynthesis protein.
  
     0.574
Dfer_4587
KEGG: cts:Ctha_1515 hypothetical protein.
 
    
0.568
Dfer_0006
KEGG: chu:CHU_3739 magnesium chelatase, subunit ChlI.
  
 
 0.550
Dfer_4604
PFAM: lipopolysaccharide biosynthesis protein; KEGG: pdi:BDI_1145 putative protein involved in capsular polysaccharide biosynthesis.
  
     0.550
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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