STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAKEGG: cja:CJA_3061 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (442 aa)    
Predicted Functional Partners:
Dfer_4109
PFAM: carbohydrate kinase FGGY; KEGG: bvu:BVU_3954 xylulose kinase.
 
 
 0.978
Dfer_5716
PFAM: ROK family protein; KEGG: cts:Ctha_1950 ROK family protein.
    
 0.914
Dfer_1603
Levanase; KEGG: gfo:GFO_0009 glycosyl hydrolase, family 32; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; Belongs to the glycosyl hydrolase 32 family.
     
 0.910
Dfer_1600
PFAM: PfkB domain protein; KEGG: gfo:GFO_0012 PfkB family carbohydrate kinase.
     
 0.906
Dfer_3313
PFAM: FAD linked oxidase domain protein; D- arabinono-14-lactone oxidase; KEGG: hypothetical protein.
     
  0.900
Dfer_3960
PFAM: ROK family protein; KEGG: chu:CHU_1875 glucokinase.
    
 0.828
Dfer_4328
PFAM: ROK family protein; KEGG: bfr:BF1751 transcriptional regulator.
    
 0.828
Dfer_4139
Beta-galactosidase; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: tle:Tlet_1296 glycoside hydrolase family protein.
    
 0.813
Dfer_3132
PFAM: carbohydrate kinase FGGY; KEGG: sen:SACE_6529 carbohydrate kinase, FGGY.
 
  
 0.520
Dfer_4722
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: bvu:BVU_1370 hypothetical protein.
       0.500
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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