STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5029PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: aas:Aasi_0981 hypothetical protein. (765 aa)    
Predicted Functional Partners:
Dfer_4764
PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: chu:CHU_0176 glycosyltransferase.
  
  
 
0.906
Dfer_1305
PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: aas:Aasi_0981 hypothetical protein.
  
  
 
0.901
Dfer_2015
Penicillin-binding protein 2; KEGG: chu:CHU_3305 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
 
 
 
 0.856
Dfer_3521
Peptidoglycan glycosyltransferase; KEGG: chu:CHU_2746 cell division protein, penicillin-binding protein; PFAM: penicillin-binding protein transpeptidase; PASTA domain containing protein; SMART: PASTA domain containing protein.
 
 
 
 0.851
Dfer_2890
PFAM: DivIVA family protein; KEGG: chu:CHU_0760 cell division initiation protein.
   
 
 0.831
Dfer_2014
TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: chu:CHU_3304 rod shape-determining protein; Belongs to the SEDS family.
  
 
 
 0.748
Dfer_5030
KEGG: tex:Teth514_1896 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.
       0.729
Dfer_3489
PFAM: cell cycle protein; KEGG: aas:Aasi_0815 hypothetical protein; Belongs to the SEDS family.
  
 
 
 0.706
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.696
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.690
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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