STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5192PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: aba:Acid345_0484 aminotransferase, class V; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (392 aa)    
Predicted Functional Partners:
Dfer_2463
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: chu:CHU_0245 thiamine biosynthesis protein (HesA/MoeB/ThiF family protein).
   
 0.980
Dfer_2049
PFAM: aminotransferase class V; KEGG: aas:Aasi_0017 aminotransferase class V.
  
  
 
0.918
Dfer_4416
PFAM: aminotransferase class V; KEGG: chu:CHU_3485 cysteine desulfurase.
  
  
 
0.918
Dfer_1199
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: fjo:Fjoh_2623 rhodanese domain-containing protein.
   
 0.917
Dfer_5191
PFAM: protein of unknown function DUF182; KEGG: fjo:Fjoh_4205 alanine dehydrogenase.
     
 0.800
Dfer_5190
KEGG: fjo:Fjoh_4204 MobA-like protein-like protein.
       0.776
Dfer_1915
PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: rle:pRL110471 putative flavoprotein/ferredoxin.
  
 0.742
Dfer_3723
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; Oxidoreductase FAD-binding domain protein; KEGG: chu:CHU_1564 phenylacetate-CoA oxygenase/reductase, PaaK subunit.
  
 0.742
Dfer_4880
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: chu:CHU_1564 phenylacetate-CoA oxygenase/reductase, PaaK subunit.
  
 0.742
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
  
 0.724
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.